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Glycogen Storage Disease Type Ia via the G6PC1/G6PC Gene

Summary and Pricing

Test Method

Exome Sequencing with CNV Detection
Test Code Test Copy GenesTest CPT Code Gene CPT Codes Copy CPT Codes Base Price
9601 G6PC1 81479 81479,81479 $890 Order Options and Pricing
Test Code Test Copy Genes Test CPT Code Gene CPT Codes Copy CPT Code Base Price
9601G6PC181479 81479,81479 $890 Order Options and Pricing

Pricing Comments

Our favored testing approach is exome based NextGen sequencing with CNV analysis. This will allow cost effective reflexing to PGxome or other exome based tests. However, if full gene Sanger sequencing is desired for STAT turnaround time, insurance, or other reasons, please see link below for Test Code, pricing, and turnaround time information. If the Sanger option is selected, CNV detection may be ordered through Test #600.

An additional 25% charge will be applied to STAT orders. STAT orders are prioritized throughout the testing process.

Click here for costs to reflex to whole PGxome (if original test is on PGxome Sequencing backbone).

Click here for costs to reflex to whole PGnome (if original test is on PGnome Sequencing backbone).

The Sanger Sequencing method for this test is NY State approved.

For Sanger Sequencing click here.

Turnaround Time

18 days on average for standard orders or 13 days on average for STAT orders.

Please note: Once the testing process begins, an Estimated Report Date (ERD) range will be displayed in the portal. This is the most accurate prediction of when your report will be complete and may differ from the average TAT published on our website. About 85% of our tests will be reported within or before the ERD range. We will notify you of significant delays or holds which will impact the ERD. Learn more about turnaround times here.

Targeted Testing

For ordering sequencing of targeted known variants, go to our Targeted Variants page.

EMAIL CONTACTS

Genetic Counselors

Geneticist

  • Maxime Cadieux-Dion, PhD

Clinical Features and Genetics

Clinical Features

Glycogen storage disease type Ia (GSDIa, also known as Von Gierke disease) is caused by a deficiency of glucose-6-phosphatase, resulting in glycogen accumulation in the liver, kidney, and intestinal mucosa. Symptoms appear in the first year of life with severe fasting hypoglycemia, massive hepatomegaly, hyperlipidemia, hyperuricemia, lactic acidosis, and growth retardation. Patients with GSDIa may also display sweating, irritability, and muscle weakness.

Genetics

GSDIa is inherited in an autosomal recessive manner. Incidence is roughly 1 in 100,000 births with a carrier rate of about 1 in 150. Lei et al. identified variants in the G6PC1/G6PC (glucose-6-phosphatase catalytic subunit) gene as the cause of GSDIa (Lei et al. Science 262:580-583, 1993). The 12.6 kb G6PC1 gene with 5 exons encodes the key enzyme in homeostatic regulation of blood glucose levels.

Approximately 100 different variants have been identified in the G6PC1 gene (Shieh et al. J Biol Chem 277:5047-5053, 2002; Froissart and Maire Orphanet Encyclopedia 2002; Human Gene Mutation Database (http://www.hgmd.org/)).

Clinical Sensitivity - Sequencing with CNV PGxome

Based on results from the literature, we estimate that our full gene sequencing test will detect likely causative variants in nearly all patients with GSDIa.

Testing Strategy

This test provides full coverage of all coding exons of the G6PC1 gene plus 10 bases of flanking noncoding DNA in all available transcripts along with other non-coding regions in which pathogenic variants have been identified at PreventionGenetics or reported elsewhere. We define full coverage as >20X NGS reads or Sanger sequencing. PGnome panels typically provide slightly increased coverage over the PGxome equivalent. PGnome sequencing panels have the added benefit of additional analysis and reporting of deep intronic regions (where applicable).

Dependent on the sequencing backbone selected for this testing, discounted reflex testing to any other similar backbone-based test is available (i.e., PGxome panel to whole PGxome; PGnome panel to whole PGnome).

Indications for Test

Candidates for this test are patients with symptoms consistent with GSDIa and the family members of patients with known variants. This test may also be considered for the reproductive partners of individuals who carry pathogenic variants in G6PC1.

Gene

Official Gene Symbol OMIM ID
G6PC1 613742
Inheritance Abbreviation
Autosomal Dominant AD
Autosomal Recessive AR
X-Linked XL
Mitochondrial MT

Disease

Name Inheritance OMIM ID
Glycogen Storage Disease Type Ia AR 232200

Related Tests

Name
Glycogen Storage Disease Type Ib via the SLC37A4 (G6PT1) Gene
Glycogen Storage Disease Type III via the AGL Gene

Citations

  • Lei, K. J., et.al. (1993). "Mutations in the glucose-6-phosphatase gene that cause glycogen storage disease type 1a." Science 262(5133): 580-3. PubMed ID: 8211187

Ordering/Specimens

Ordering Options

We offer several options when ordering sequencing tests. For more information on these options, see our Ordering Instructions page. To view available options, click on the Order Options button within the test description.

myPrevent - Online Ordering

  • The test can be added to your online orders in the Summary and Pricing section.
  • Once the test has been added log in to myPrevent to fill out an online requisition form.
  • PGnome sequencing panels can be ordered via the myPrevent portal only at this time.

Requisition Form

  • A completed requisition form must accompany all specimens.
  • Billing information along with specimen and shipping instructions are within the requisition form.
  • All testing must be ordered by a qualified healthcare provider.

For Requisition Forms, visit our Forms page


Specimen Types

Specimen Requirements and Shipping Details

PGxome (Exome) Sequencing Panel

PGnome (Genome) Sequencing Panel

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ORDER OPTIONS

View Ordering Instructions

1) Select Test Method (Backbone)


1) Select Test Type


2) Select Additional Test Options

STAT and Prenatal Test Options are not available with Patient Plus.

No Additional Test Options are available for this test.

Note: acceptable specimen types are whole blood and DNA from whole blood only.
Total Price: $
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