Cortical Dysplasia, Complex, with Other Brain Malformations 4 via the TUBG1 Gene
Summary and Pricing
Test Method
Bi-Directional Sanger SequencingTest Code | Test Copy Genes | Test CPT Code | Gene CPT Codes Copy CPT Code | Base Price | |
---|---|---|---|---|---|
5898 | TUBG1 | 81479 | 81479 | $750 | Order Options and Pricing |
An additional 25% charge will be applied to STAT orders. STAT orders are prioritized throughout the testing process.
Turnaround Time
4 weeks on average for standard orders or 2 weeks on average for STAT orders.
Please note: Once the testing process begins, an Estimated Report Date (ERD) range will be displayed in the portal. This is the most accurate prediction of when your report will be complete and may differ from the average TAT published on our website. About 85% of our tests will be reported within or before the ERD range. We will notify you of significant delays or holds which will impact the ERD. Learn more about turnaround times here.
Targeted Testing
For ordering sequencing of targeted known variants, go to our Targeted Variants page.
Clinical Features and Genetics
Clinical Features
Cortical dysplasia, complex, with other brain malformations 4 is one type of heterogeneous tubulinopathy and is characterized by posterior predominant pachygyria. The major features include severe microcephaly, severe motor and cognitive impairment, and early onset seizures with generalized tonic-clonic, tonic–atonic–myoclonic, focal, versive and infantile spasms. Cataract and spastic tetraplegia also can be seen in some patients. Brain MRI shows pachygyric cortex with posterior to anterior gradient, enlarged lateral ventricles most pronounced over the posterior horns, and variable degrees of reduced white matter volume (Brock et al. 2018. PubMed ID: 29706637; Poirier et al. 2013. PubMed ID: 23603762). Seizure types are variable and include generalized tonic-clonic, atonic, myoclonic, complex partial, and absence.
Genetics
Cortical dysplasia, complex, with other brain malformations 4 is inherited in an autosomal dominant manner and is caused by pathogenic variants in the TUBG1 gene. TUBG1 encodes gamma-tubulin which is a structural protein of the centrosome and highly expressed in fetal brain. The TUBG1 protein associates with other proteins to form the gamma tubulin ring complex which plays a role in microtubule nucleation. The tubulin-related cortical dysgeneses are considered to involve a combination of abnormal neuronal proliferation, migration, differentiation and axonal guidance (Poirier et al. 2013. PubMed ID: 23603762). The reported pathogenic variants in TUBG1 include missense variants only at this time. Large deletions or duplications have not been reported (Brock et al. 2018. PubMed ID: 29706637; Poirier et al. 2013. PubMed ID: 23603762; Human Gene Mutation Database). Almost all of the pathogenic variants have occurred de novo. Germline mosaicism has been seen in one patient (Brock et al. 2018. PubMed ID: 29706637).
Clinical Sensitivity - Sanger Sequencing
Tubulinopathies are clinically and genetically heterogeneous. Clinical sensitivity for TUBG1 cannot be estimated because only a small number of patients have been reported. Analytical sensitivity should be high because all pathogenic variants reported are detectable by sequencing.
Testing Strategy
Our DNA sequencing test involves bidirectional Sanger DNA sequencing of all coding exons of the TUBG1 gene plus ~10 bp of flanking non-coding DNA on either side of each exon. We will also sequence any single exon (Test #100) in family members of patients with a known pathogenic variant or to confirm research results.
Indications for Test
The TUBG1 sequencing test is recommended for patients who are suspected to have cortical dysplasia, complex, with other brain malformations 4.
The TUBG1 sequencing test is recommended for patients who are suspected to have cortical dysplasia, complex, with other brain malformations 4.
Gene
Official Gene Symbol | OMIM ID |
---|---|
TUBG1 | 191135 |
Inheritance | Abbreviation |
---|---|
Autosomal Dominant | AD |
Autosomal Recessive | AR |
X-Linked | XL |
Mitochondrial | MT |
Disease
Name | Inheritance | OMIM ID |
---|---|---|
Cortical Dysplasia, Complex, with other Brain Malformations 4 | AD | 615412 |
Citations
Ordering/Specimens
Ordering Options
We offer several options when ordering sequencing tests. For more information on these options, see our Ordering Instructions page. To view available options, click on the Order Options button within the test description.
myPrevent - Online Ordering
- The test can be added to your online orders in the Summary and Pricing section.
- Once the test has been added log in to myPrevent to fill out an online requisition form.
- PGnome sequencing panels can be ordered via the myPrevent portal only at this time.
Requisition Form
- A completed requisition form must accompany all specimens.
- Billing information along with specimen and shipping instructions are within the requisition form.
- All testing must be ordered by a qualified healthcare provider.
For Requisition Forms, visit our Forms page
Specimen Types
ORDER OPTIONS
View Ordering Instructions1) Select Test Type
2) Select Additional Test Options
No Additional Test Options are available for this test.